Expression divergence of the AGL6 MADS domain transcription factor lineage after a core eudicot duplication suggests functional diversification
Identifieur interne : 001A60 ( Main/Exploration ); précédent : 001A59; suivant : 001A61Expression divergence of the AGL6 MADS domain transcription factor lineage after a core eudicot duplication suggests functional diversification
Auteurs : Tom Viaene [Belgique] ; Dries Vekemans [Belgique] ; Annette Becker [Allemagne] ; Siegbert Melzer [Belgique] ; Koen Geuten [Belgique]Source :
- BMC Plant Biology [ 1471-2229 ] ; 2010.
Abstract
Because of their known role as transcriptional regulators of key plant developmental processes, the diversification of MADS-box gene function is thought to be a major driving force in the developmental evolution of plants. Yet the function of some MADS-box gene subfamilies has remained elusive thus far. One such lineage,
Based on phylogenetic analyses of newly isolated and EST-based sequences, we describe the duplication history of the
These and previous data lead us to propose that the
Url:
DOI: 10.1186/1471-2229-10-148
PubMed: 20633275
PubMed Central: 3095293
Affiliations:
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of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Becker, Annette" sort="Becker, Annette" uniqKey="Becker A" first="Annette" last="Becker">Annette Becker</name><affiliation wicri:level="3"><nlm:aff id="I2">Evolutionary Developmental Genetics Group, University of Bremen, Leobener Str., UFT, 28359 Bremen, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Evolutionary Developmental Genetics Group, University of Bremen, Leobener Str., UFT, 28359 Bremen</wicri:regionArea><placeName><region type="land" nuts="3">Brême (Land)</region><settlement type="city">Brême</settlement></placeName></affiliation></author><author><name sortKey="Melzer, Siegbert" sort="Melzer, Siegbert" uniqKey="Melzer S" first="Siegbert" last="Melzer">Siegbert Melzer</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Geuten, Koen" sort="Geuten, Koen" uniqKey="Geuten K" first="Koen" last="Geuten">Koen Geuten</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">20633275</idno><idno type="pmc">3095293</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3095293</idno><idno type="RBID">PMC:3095293</idno><idno type="doi">10.1186/1471-2229-10-148</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">000E27</idno><idno type="wicri:Area/Pmc/Curation">000E26</idno><idno type="wicri:Area/Pmc/Checkpoint">000F56</idno><idno type="wicri:Area/Ncbi/Merge">000C02</idno><idno type="wicri:Area/Ncbi/Curation">000C02</idno><idno type="wicri:Area/Ncbi/Checkpoint">000C02</idno><idno type="wicri:Area/Main/Merge">001A96</idno><idno type="wicri:Area/Main/Curation">001A60</idno><idno type="wicri:Area/Main/Exploration">001A60</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Expression divergence of the <italic>AGL6 </italic>MADS domain transcription factor lineage after a core eudicot duplication suggests functional diversification</title><author><name sortKey="Viaene, Tom" sort="Viaene, Tom" uniqKey="Viaene T" first="Tom" last="Viaene">Tom Viaene</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Vekemans, Dries" sort="Vekemans, Dries" uniqKey="Vekemans D" first="Dries" last="Vekemans">Dries Vekemans</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Becker, Annette" sort="Becker, Annette" uniqKey="Becker A" first="Annette" last="Becker">Annette Becker</name><affiliation wicri:level="3"><nlm:aff id="I2">Evolutionary Developmental Genetics Group, University of Bremen, Leobener Str., UFT, 28359 Bremen, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Evolutionary Developmental Genetics Group, University of Bremen, Leobener Str., UFT, 28359 Bremen</wicri:regionArea><placeName><region type="land" nuts="3">Brême (Land)</region><settlement type="city">Brême</settlement></placeName></affiliation></author><author><name sortKey="Melzer, Siegbert" sort="Melzer, Siegbert" uniqKey="Melzer S" first="Siegbert" last="Melzer">Siegbert Melzer</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author><author><name sortKey="Geuten, Koen" sort="Geuten, Koen" uniqKey="Geuten K" first="Koen" last="Geuten">Koen Geuten</name><affiliation wicri:level="1"><nlm:aff id="I1">Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven, Belgium</nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Laboratory of Plant Systematics, Institute of Botany and Microbiology, Kasteelpark Arenberg 31, PO Box 2437, B-3001 Leuven</wicri:regionArea><wicri:noRegion>B-3001 Leuven</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Plant Biology</title><idno type="eISSN">1471-2229</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>Because of their known role as transcriptional regulators of key plant developmental processes, the diversification of MADS-box gene function is thought to be a major driving force in the developmental evolution of plants. Yet the function of some MADS-box gene subfamilies has remained elusive thus far. One such lineage, <italic>AGL6</italic>, has now been functionally characterized in three angiosperm species, but a phylogenetic framework for comparison of <italic>AGL6 </italic>gene function is currently missing.</p></sec><sec><title>Results</title><p>Based on phylogenetic analyses of newly isolated and EST-based sequences, we describe the duplication history of the <italic>AGL6 </italic>subfamily in angiosperms. Our analyses provide support for four ancient duplications in the evolution of the <italic>AGL6 </italic>lineage: one at the base of core eudicots resulting in <italic>euAGL6 </italic>and <italic>AGL6-like </italic>gene clades, one during basal angiosperm diversification and two in monocot evolution. To investigate whether the spatial domains in which <italic>AGL6 </italic>genes function have diverged after duplication, we use quantitative Real Time PCR. We show that the core eudicot <italic>AGL6-like </italic>clade acquired expression in vegetative tissues, while its paralog <italic>euAGL6 </italic>remains predominantly confined to reproductive tissues.</p></sec><sec><title>Conclusions</title><p>These and previous data lead us to propose that the <italic>AGL6 </italic>lineage in core eudicots, in addition to functions related to the expression in reproductive structures, may have acquired a function in developmental transitions of vegetative shoots.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Becker, A" uniqKey="Becker A">A Becker</name></author><author><name sortKey="Theissen, G" uniqKey="Theissen G">G Theissen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Carlsbecker, A" uniqKey="Carlsbecker A">A Carlsbecker</name></author><author><name sortKey="Sundstrom, J" uniqKey="Sundstrom J">J Sundström</name></author><author><name 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uniqKey="Oertle L">L Oertle</name></author><author><name sortKey="Widmayer, P" uniqKey="Widmayer P">P Widmayer</name></author><author><name sortKey="Gruissem, W" uniqKey="Gruissem W">W Gruissem</name></author><author><name sortKey="Zimmerman, P" uniqKey="Zimmerman P">P Zimmerman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mathieu, J" uniqKey="Mathieu J">J Mathieu</name></author><author><name sortKey="Yant, Lj" uniqKey="Yant L">LJ Yant</name></author><author><name sortKey="Murdter, F" uniqKey="Murdter F">F Mürdter</name></author><author><name sortKey="Kuttner, F" uniqKey="Kuttner F">F Küttner</name></author><author><name sortKey="Schmid, M" uniqKey="Schmid M">M Schmid</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Belgique</li></country><region><li>Brême (Land)</li></region><settlement><li>Brême</li></settlement></list><tree><country name="Belgique"><noRegion><name sortKey="Viaene, Tom" sort="Viaene, Tom" uniqKey="Viaene T" first="Tom" last="Viaene">Tom Viaene</name></noRegion><name sortKey="Geuten, Koen" sort="Geuten, Koen" uniqKey="Geuten K" first="Koen" last="Geuten">Koen Geuten</name><name sortKey="Melzer, Siegbert" sort="Melzer, Siegbert" uniqKey="Melzer S" first="Siegbert" last="Melzer">Siegbert Melzer</name><name sortKey="Vekemans, Dries" sort="Vekemans, Dries" uniqKey="Vekemans D" first="Dries" last="Vekemans">Dries Vekemans</name></country><country name="Allemagne"><region name="Brême (Land)"><name sortKey="Becker, Annette" sort="Becker, Annette" uniqKey="Becker A" first="Annette" last="Becker">Annette Becker</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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